A context-aware neural network for modeling and predicting protein binding to nucleic acids using only sequence input.


Online platform

We provide an easy-to-use web interface for DeepCLIP where you can train your own DeepCLIP models or use pre-trained models.

Go to web interface Read user guide

Stand-alone program

DeepCLIP is also available as a stand-alone Python program.

Download on GitHub


If you use DeepCLIP in your research, we kindly ask you to cite the following publication:

Grønning AGB, Doktor TK, et al. DeepCLIP: predicting the effect of mutations on protein-RNA binding with deep learning. Nucleic Acids Res. 2020 Jul 27;48(13):7099-7118.

Download from OUP


If you want to contact us regarding DeepCLIP, please contact us in the following order: